16S rRNA gene sequencing of rectal swab in patients affected by COVID-19/Experiment 1/Signature 2

From BugSigDB
Reviewed Marked as Reviewed by Fatima on 2022/05/25

Curated date: 2021/07/04

Curator: Claregrieve1

Revision editor(s): Claregrieve1

Source: Table S5, S8, S11

Description: Differential abundance of microbial taxa between controls and ICU-admitted COVID-19 patients

Abundance in Group 1: decreased abundance in COVID-positive patients admitted to ICU (i-COVID-19)

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Acetivibrio
Alistipes putredinis
Anaerobutyricum hallii
Anaerostipes hadrus
Anaerotruncus
Anaerotruncus colihominis
Atopobium deltae
Bacteroides clarus
Bacteroides eggerthii
Bacteroides fragilis
Bacteroides nordii
Bacteroides salyersiae
Bacteroides sp.
Bacteroides stercoris
Butyricicoccus sp.
Carnobacteriaceae
Christensenellaceae
Citrobacter
Eubacteriales Family XIII. Incertae Sedis
Clostridium sp.
Collinsella
Coprobacter
Coprobacter fastidiosus
Coriobacteriaceae
Desulfovibrio
Dorea longicatena
Eisenbergiella
Enterocloster bolteae
Enterocloster clostridioformis
Enterocloster lavalensis
Faecalibacterium
Faecalibacterium prausnitzii
Faecalibacterium sp.
Fenollaria
Fenollaria massiliensis
Flavonifractor
Flavonifractor plautii
Fusicatenibacter
Granulicatella
Halanaerobium
Leuconostoc
Mycoplasma
Mycoplasmataceae
Oribacterium
Oribacterium sp.
Oscillospira guilliermondii
Peptococcus
Phocaeicola massiliensis
Prevotella bivia
Pseudoflavonifractor
Pyramidobacter
Pyramidobacter piscolens
Robinsoniella
Salmonella
Subdoligranulum
Vibrio
Thomasclavelia spiroformis
unclassified Coriobacteriaceae
unclassified Oscillospiraceae
unclassified Coriobacteriia
Actinotignum
Metaprevotella
unclassified Rikenellaceae
Faecalicatena
Caproiciproducens
Peptoniphilus gorbachii
Prevotella sp. MC_18
Prevotella sp. DJF_RP53
Corynebacterium pyruviciproducens
Corynebacterium sp. NML96-0085
Metaprevotella massiliensis
Peptoniphilus sp. S470
Peptoniphilus sp. gpac007
Prevotella sp. BI-42
Anaerobium acetethylicum
Actinotignum schaalii
Saccharofermentans acetigenes
unclassified Hungatella
unclassified Collinsella
unclassified Butyricimonas
Clostridium sp. A9
Anaerostipes sp. 992a
Clostridium sp. enrichment culture clone 7-14
unclassified Desulfovibrio
Varibaculum cambriense
Fusicatenibacter saccharivorans
unclassified Ruminiclostridium
Clostridium sp. 14505
Intestinimonas sp. FSAA-17
unclassified Tyzzerella
Bacteroides finegoldii
unclassified Anaerostipes
Clostridium sp. BPY5
Prevotella sp. oral taxon G70
unclassified Caproiciproducens
unclassified Klebsiella

Revision editor(s): Claregrieve1