16S rRNA gene sequencing of rectal swab in patients affected by COVID-19/Experiment 2/Signature 1

Reviewed Marked as Reviewed by Fatima on 2022/06/1

Curated date: 2021/07/06

Revision editor(s): Claregrieve1

Source: Table S6, S9, S12

Description: Differential microbial abundance between ICU COVID-19 patients (i-COVID-19) and non-ICU COVID-19 patients (w-COVID-19)

Abundance in Group 1: increased abundance in COVID-positive patients admitted to ICU (i-COVID-19)

NCBI	Quality Control	Links
unclassified Burkholderiales
Nocardiaceae
unclassified Alphaproteobacteria
Pseudonocardiaceae
unclassified Erysipelotrichales
Mycobacteriaceae
unclassified Hyphomicrobiales
unclassified Erysipelotrichia
Aeromonadaceae
Rhodospirillaceae
Micrococcaceae
Brevibacteriaceae
Corynebacteriaceae
Staphylococcaceae
Microbacteriaceae
Paenibacillaceae
Arthrobacter
unclassified Micrococcaceae
Slackia
unclassified Erysipelotrichaceae
Vagococcus
Microbacterium
Paenibacillus
Micrococcus
Rhodococcus
unclassified Corynebacteriaceae
Kocuria
Streptomyces
Candidatus Phytoplasma
unclassified Flavobacteriaceae
Mycobacterium
Aeromonas
Mogibacterium
Howardella
Fonticella
Haemophilus
Ihubacter
Staphylococcus
Corynebacterium
Brevibacterium
Corynebacterium imitans
Enterococcus sp. DJF_SLA47
Slackia sp.
Fusobacterium sp.
Lactobacillus gasseri
Clostridium fusiformis
Peptoniphilus sp. S362
Corynebacterium aurimucosum
Anaerococcus provencensis
Staphylococcus aureus
Corynebacterium afermentans
Enterococcus durans
Rhodococcus sp. (in: high G+C Gram-positive bacteria)
Corynebacterium tuscaniense
[Ruminococcus] lactaris
Prevotella sp. S4-8
Bacteroides sp. MANG
unclassified Bifidobacteriaceae (miscellaneous)
Butyrivibrio crossotus
Senegalimassilia anaerobia
unclassified Vagococcus
Gorbachella
Howardella ureilytica
Enterococcus casseliflavus
unclassified Mogibacterium
unclassified Fonticella
Clostridium sp. TM-40
unclassified Parasutterella
Staphylococcus sp.
Staphylococcus epidermidis

Revision editor(s): Claregrieve1