16S rRNA gene sequencing of rectal swab in patients affected by COVID-19/Experiment 2/Signature 2

From BugSigDB
Reviewed Marked as Reviewed by Fatima on 2022/06/1

Curated date: 2021/07/06

Curator: Claregrieve1

Revision editor(s): Claregrieve1

Source: Table S6, S9, S12

Description: Differential microbial abundance between ICU COVID-19 patients (i-COVID-19) and non-ICU COVID-19 patients (w-COVID-19)

Abundance in Group 1: decreased abundance in COVID-positive patients admitted to ICU (i-COVID-19)

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Aerococcus
Alcanivoracaceae
Alcanivorax
Alterileibacterium massiliense
Anaerococcus degeneri
Anaerostipes hadrus
Campylobacter hominis
Carnobacteriaceae
Citrobacter
Eubacteriales Family XIII. Incertae Sedis
Collinsella
Collinsella aerofaciens
Coprobacillus
Coprobacillus cateniformis
Coprobacter
Coprobacter fastidiosus
Coriobacteriaceae
Coriobacteriia
Cronobacter
Desulfovibrio
Dialister micraerophilus
Enterocloster clostridioformis
Eubacterium ramulus
Faecalibacterium
Faecalibacterium sp.
Fenollaria
Fenollaria massiliensis
Flavonifractor
Granulicatella
Ileibacterium
Kallipyga massiliensis
Lachnospira
Lachnospira pectinoschiza
Lactococcus
Lagierella massiliensis
Metaprevotella
Metaprevotella massiliensis
Micromonosporaceae
Moritellaceae
Murdochiella
Olsenella
Parabacteroides johnsonii
Pectobacteriaceae
Phocaeicola massiliensis
Hallella colorans
Prevotella disiens
Prevotella sp. DJF_RP53
Roseburia faecis
Salmonella
Selenomonadaceae
Selenomonas
Subdoligranulum
Sutterella
Varibaculum anthropi
Vibrio
[Eubacterium] siraeum
unclassified Acidaminococcaceae
unclassified Coriobacteriaceae
unclassified Coriobacteriia
unclassified Deltaproteobacteria
unclassified Fenollaria
unclassified Peptostreptococcaceae
unclassified Phascolarctobacterium
Bacteroides sp. DJF_B097
[Lactobacillus] rogosae
Faecalibacterium prausnitzii
Prevotella bivia
Roseburia sp.
Klebsiella aerogenes
Salmonella enterica
Dorea longicatena
Anaerobutyricum hallii
Roseburia sp. 1120
Hallella bergensis
Streptococcus thermophilus
unclassified Butyricimonas
unclassified Enterobacter
unclassified Collinsella
unclassified Escherichia
Prevotella sp. S8 F8
Escherichia sp. C71
Anaerostipes sp. 992a
unclassified Hungatella
Ruminococcus sp. Marseille-P328
unclassified Ruminiclostridium
Clostridium sp. BPY5
Alistipes sp. enrichment culture clone
Pantoea agglomerans
Shigella sonnei
Marseillibacter massiliensis
Coprococcus sp.
unclassified Desulfovibrio
Moritella abyssi
Clostridium sp. enrichment culture clone 7-14
Granulicatella sp.
Blautia sp. Marseille-P2398
unclassified Anaerostipes
Oscillibacter sp. Marseille-P3260
Enterobacter cloacae

Revision editor(s): Claregrieve1