16S rRNA gene sequencing of rectal swab in patients affected by COVID-19/Experiment 3/Signature 1

From BugSigDB
Reviewed Marked as Reviewed by Fatima on 2022/05/25

Curated date: 2021/07/04

Curator: Claregrieve1

Revision editor(s): Claregrieve1

Source: Table S1, S4, S7, S10

Description: Differential abundance of microbial taxa between non-COVID-19 patients and non-ICU COVID-19 patients

Abundance in Group 1: increased abundance in COVID-positive patients admitted to infectious disease ward (w-COVID-19)

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Pseudomonadota
Alcanivoracaceae
unclassified Actinomycetota
unclassified Micrococcales
unclassified Deltaproteobacteria
unclassified Acidaminococcaceae
unclassified Veillonellaceae
Pectobacteriaceae
Syntrophomonadaceae
Streptomycetaceae
Selenomonadaceae
Dermabacteraceae
unclassified Sphingobacteriia
Acidithiobacillaceae
Peptostreptococcaceae
Enterobacteriaceae
unclassified Negativicutes
Aerococcaceae
Staphylococcaceae
Atopobiaceae
Vibrionaceae
Alcanivorax
Aerococcus
Sutterella
Syntrophobotulus
Coprobacillus
unclassified Peptostreptococcaceae
Olsenella
Actinomycetota
unclassified Sutterellaceae
Negativicoccus
Lactococcus
Candidatus Syntrophonatronum
Angelakisella
Acidaminococcus
Pacaella
Selenomonas
unclassified Enterococcaceae
Holdemanella
Hespellia
Acidithiobacillus
Megasphaera
Bilophila
Escherichia
unclassified Enterobacteriaceae
unclassified Streptococcaceae
Vibrio
Prevotella disiens
Hallella colorans
Dialister micraerophilus
Peptostreptococcus anaerobius
Anaerococcus octavius
Parabacteroides johnsonii
Murdochiella asaccharolytica
Alterileibacterium massiliense
Alistipes senegalensis
Peptoniphilus sp. oral taxon 375
Peptoniphilus sp. S276
Megasphaera sp. DNF00912
Bacteroides sp. DJF_B097
Coprobacillus cateniformis
Holdemanella biformis
Anaerococcus obesiensis
Kallipyga massiliensis
Megasphaera sp.
Enterococcus faecium
Atopobium sp.
Hoylesella buccalis
Streptococcus thermophilus
Facklamia hominis
Enterococcus hirae
Prevotella sp. S8 F8
Porphyromonas asaccharolytica
Escherichia sp. C71
Ruminococcus sp. Marseille-P328
Corynebacterium amycolatum
Shigella sonnei
Pantoea agglomerans
unclassified Facklamia
Syntrophobotulus glycolicus
Blautia sp. Marseille-P2398
Staphylococcus hominis
Candidatus Syntrophonatronum acetioxidans
unclassified Angelakisella
Megasphaera massiliensis
Dialister succinatiphilus
Serratia marcescens
Acidaminococcus intestini
Dialister sp. S7D
Pacaella massiliensis
Candidatus Peptoniphilus massiliensis
unclassified Sutterella
Oscillibacter sp. Marseille-P3260
Klebsiella oxytoca
Butyricimonas phoceensis
Alistipes sp. enrichment culture clone
Paraprevotella clara
Selenomonas ruminantium
Corynebacterium sp. IrT-R5M2-141
Streptococcus anginosus
unclassified Escherichia
unclassified Enterobacter
Cronobacter sakazakii
Roseburia sp.
Eubacterium coprostanoligenes
Staphylococcus sp.

Revision editor(s): Claregrieve1