16S rRNA gene sequencing of rectal swab in patients affected by COVID-19/Experiment 3/Signature 2

From BugSigDB
Reviewed Marked as Reviewed by Lwaldron on 2022/04/27

Curated date: 2021/07/04

Curator: Claregrieve1

Revision editor(s): Claregrieve1

Source: Table S1, S4, S7, S10

Description: Differential abundance of microbial taxa between non-COVID-19 patients and non-ICU COVID-19 patients

Abundance in Group 1: decreased abundance in COVID-positive patients admitted to infectious disease ward (w-COVID-19)

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Spirochaetota
Fusobacteriota
Aeromonadaceae
Mycoplasmataceae
Eubacteriales Family XIII. Incertae Sedis
Burkholderiaceae
Moraxellaceae
unclassified Burkholderiales
Caulobacteraceae
Propionibacteriaceae
Proteus
Morganellaceae
unclassified Propionibacteriaceae
Actinotignum
unclassified Corynebacteriaceae
Eisenbergiella
Microbacterium
Faecalicatena
Anaerotruncus
Caproiciproducens
Peptococcus
Fusicatenibacter
Erysipelotrichaceae
Pseudoflavonifractor
Paenibacillus
Aeromonas
Robinsoniella
Acetivibrio
Leuconostoc
Ruthenibacterium
unclassified Rikenellaceae
Christensenellaceae
unclassified Lactobacillaceae
Mycoplasma
Gemella
Acinetobacter
unclassified Pseudomonadaceae
Bacteroides eggerthii
Bacteroides salyersiae
Corynebacterium pyruviciproducens
Alistipes putredinis
Peptoniphilus sp. S470
Proteus mirabilis
unclassified Proteus (in: enterobacteria)
Corynebacterium sp. NML96-0085
unclassified Saccharofermentans
Acetivibrio cellulolyticus
Bacteroides stercoris
Anaerobium acetethylicum
Actinotignum schaalii
Ruminococcus gauvreauii
Bacteroides fragilis
Thomasclavelia ramosa
Clostridium sp.
Clostridium sp. A9
Bacteroides sp. MANG
unclassified Microbacterium
Intestinimonas sp. FSAA-17
Clostridium sp. 14505
Candidatus Dorea massiliensis
[Clostridium] scindens
Alistipes shahii
Mediterraneibacter glycyrrhizinilyticus
unclassified Tyzzerella
Bacteroides finegoldii
unclassified Erysipelotrichaceae
unclassified Caproiciproducens
Fusicatenibacter saccharivorans
Anaerotruncus colihominis
unclassified Butyricicoccus
Butyricimonas sp. S479
Prevotella sp. oral taxon G70
Enterocloster lavalensis
Fusobacterium sp.
Bacteroides sp.
Ruthenibacterium lactatiformans
Bacteroides nordii
Ruminococcus sp. 653
Clostridium sp. enrichment culture
Enterocloster bolteae
Saccharofermentans acetigenes
unclassified Paenibacillus
Eisenbergiella sp.
[Clostridium] nexile
Eisenbergiella massiliensis
[Clostridium] viride
Faecalicatena orotica
Blautia obeum
Clostridium sp. ID5
Dialister pneumosintes
Phocaeicola dorei
Bacteroides thetaiotaomicron

Revision editor(s): Claregrieve1