Body site-typical microbiome signatures for adults/Experiment 2
From BugSigDB
Reviewed Marked as Reviewed by Lwaldron on 2022/08/25
Subjects
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Skin of body Entire integument,Entire skin,Integument,Integumental organ,Pelt,Skin,Skin organ,Skin of body,skin of body
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Health study participation health questionnaire participation,health survey participation,Health study participation,health study participation
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- none
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- healthy adult skin 50% up
- Group 1 sample size Number of subjects in the case (exposed) group
- 362
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- All records NA
Lab analysis
- Sequencing type
- WMS
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- Not specified
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Statistical test
- prevalence>50% Statistical test: "prevalence>50%" is not in the list (ANCOM, ANOSIM, ANOVA, Beta Binomial Regression, Chi-Square, Cox Proportional-Hazards Regression, Dunn's test, DESeq2, edgeR, Fisher's Exact Test, ...) of allowed values.
Signature 1
Reviewed Marked as Reviewed by Lwaldron on 2022/08/25
Source: 10.5281/zenodo.5565690
Description: healthy adult skin genus >=50%
Abundance in Group 1:| NCBI | Quality Control | Links |
|---|---|---|
| Staphylococcus | ||
| Cutibacterium | ||
| Enchelyodon sp. | ||
| Corynebacterium | ||
| Streptococcus | ||
| Micrococcus | ||
| Finegoldia | ||
| Moraxella | ||
| Rothia |
Revision editor(s): Haoyanzh
Signature 2
Reviewed Marked as Reviewed by Lwaldron on 2022/08/25
Source: 10.5281/zenodo.5565690
Description: healthy adult skin species in >=50% samples
Abundance in Group 1:Revision editor(s): Haoyanzh
