Property:Statistical test

This is a property of type Text. Statistical test or computational tool used for differential abundance testing (en)

Allowed values[edit source]

ANCOM
ANCOM-BC
ANOSIM
ANOVA
Beta Binomial Regression
Chi-Square
Cox Proportional-Hazards Regression
Decision Trees (xgBoost, gradient boosting)
Dunn's test
DESeq2
edgeR
Fisher's Exact Test
Fold-change cutoff
Jonckheere's trend test
Kolmogorov-Smirnov Test
Kruskall-Wallis
LASSO Regression
LEfSe
Linear Regression
Logistic Regression
Mann-Whitney (Wilcoxon)
MaAsLin2
metagenomeSeq
Metastats
Mixed-Effects Regression
Negative Binomial Regression
NLMIXED
Pearson Correlation
PERMANOVA
PLS-DA (Partial least square discriminant analysis)
Random Forest Analysis
Spearman Correlation
Structural Equation Modeling (SEM)
T-Test
treeDA
Wald Test
Welch's T-Test
Zero-Inflated Beta Regression
Zero-Inflated Negative Binomial Regression

Usage2741Improper assignments5Constraint schema

Filter<p>The <a target="_blank" rel="nofollow noreferrer noopener" class="external text" href="https://www.semantic-mediawiki.org/wiki/Help:Property_page/Filter">search filter</a> allows the inclusion of <a target="_blank" rel="nofollow noreferrer noopener" class="external text" href="https://www.semantic-mediawiki.org/wiki/Help:Query_expressions">query expressions</a> such as <code>~</code> or <code>!</code>. The selected <a target="_blank" rel="nofollow noreferrer noopener" class="external text" href="https://www.semantic-mediawiki.org/wiki/Query_engine">query engine</a> might also support case insensitive matching or other short expressions like:</p><ul><li><code>in:</code> result should include the term, e.g. '<code>in:Foo</code>'</li></ul><ul><li><code>not:</code> result should to not include the term, e.g. '<code>not:Bar</code>'</li></ul>

Showing 20 pages using this property.

A

Almond Snacking for 8 wk Increases Alpha-Diversity of the Gastrointestinal Microbiome and Decreases Bacteroides fragilis Abundance Compared with an Isocaloric Snack in College Freshmen/Experiment 1 +

ANCOM +

Almond Snacking for 8 wk Increases Alpha-Diversity of the Gastrointestinal Microbiome and Decreases Bacteroides fragilis Abundance Compared with an Isocaloric Snack in College Freshmen/Experiment 2 +

ANCOM +

Almond Snacking for 8 wk Increases Alpha-Diversity of the Gastrointestinal Microbiome and Decreases Bacteroides fragilis Abundance Compared with an Isocaloric Snack in College Freshmen/Experiment 3 +

ANCOM +

C

Characterization of the Oral Microbiome of Medicated Type-2 Diabetes Patients/Experiment 1 +

Mann-Whitney (Wilcoxon) +, ANCOM +

T

The oral microbiota in colorectal cancer is distinctive and predictive/Experiment 1 +

ANCOM +

G

Gut microbiota in Parkinson's disease: Temporal stability and relations to disease progression/Experiment 2 +

ANCOM +, DESeq2 +

Gut microbiota in Parkinson's disease: Temporal stability and relations to disease progression/Experiment 1 +

ANCOM +, DESeq2 +

Gut microbiota in Parkinson's disease: Temporal stability and relations to disease progression/Experiment 3 +

ANCOM +, DESeq2 +

B

Breastfeeding patterns are associated with human milk microbiome composition: The Mother-Infant Microbiomes, Behavior, and Ecology Study (MIMBES)/Experiment 1 +

ANCOM +

Breastfeeding patterns are associated with human milk microbiome composition: The Mother-Infant Microbiomes, Behavior, and Ecology Study (MIMBES)/Experiment 4 +

ANCOM +

G

Gut microbiota in Parkinson's disease: Temporal stability and relations to disease progression/Experiment 4 +

ANCOM +, DESeq2 +

S

Statistical test +

ANCOM +, ANOSIM +, ANOVA +, …

T

The oral microbiota in colorectal cancer is distinctive and predictive/Experiment 2 +

ANCOM +

The oral microbiota in colorectal cancer is distinctive and predictive/Experiment 3 +

ANCOM +

S

Sputum bacterial load and bacterial composition correlate with lung function and are altered by long-term azithromycin treatment in children with HIV-associated chronic lung disease/Experiment 2 +

DESeq2 +, ANCOM +

F

Feeding Rapidly Alters Microbiome Composition and Gene Transcription in the Clownfish Gut/Experiment 1 +

ANCOM +

G

Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease/Experiment 1 +

ANCOM +

C

Characterization of microbial communities in the chicken oviduct and the origin of chicken embryo gut microbiota/Experiment 1 +

ANCOM +

D

Dental Biofilm Microbiota Dysbiosis Is Associated With the Risk of Acute Graft-Versus-Host Disease After Allogeneic Hematopoietic Stem Cell Transplantation/Experiment 3 +

ANCOM +

L

Longitudinal gut microbiota composition of South African and Nigerian infants in relation to tetanus vaccine responses/Experiment 1 +

ANCOM +

Showing 5 related entities.

B

M

Microbiome changes in healthy volunteers treated with GSK1322322, a novel antibiotic targeting bacterial peptide deformylase/Experiment 2 +

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Preparing...
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        "type_constraint": "_txt",
        "allowed_values": [
            "ANCOM",
            "ANOSIM",
            "ANOVA",
            "Beta Binomial Regression",
            "Chi-Square",
            "Cox Proportional-Hazards Regression",
            "Dunn's test",
            "DESeq2",
            "edgeR",
            "Fisher's Exact Test",
            "Fold-change cutoff",
            "Kolmogorov-Smirnov Test",
            "Kruskall-Wallis",
            "LASSO Regression",
            "LEfSe",
            "Linear Regression",
            "Logistic Regression",
            "Mann-Whitney (Wilcoxon)",
            "MaAsLin2",
            "metagenomeSeq",
            "Metastats",
            "Mixed-Effects Regression",
            "Negative Binomial Regression",
            "NLMIXED",
            "Pearson Correlation",
            "PERMANOVA",
            "PLS-DA (Partial least square discriminant analysis)",
            "Random Forest Analysis",
            "Spearman Correlation",
            "Structural Equation Modeling (SEM)",
            "T-Test",
            "Wald Test",
            "Welch's T-Test",
            "Zero-Inflated Beta Regression",
            "Zero-Inflated Negative Binomial Regression",
            "Jonckheere's trend test",
            "ANCOM-BC",
            "treeDA",
            "Decision Trees (xgBoost, gradient boosting)"
        ]
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}