Property:Statistical test
From BugSigDB
This is a property of type Text. Statistical test or computational tool used for differential abundance testing (en)
Allowed values[edit source]
- ANCOM
- ANCOM-BC
- ANCOM-BC2
- ANOSIM
- ANOVA
- Beta Binomial Regression
- Chi-Square
- Cox Proportional-Hazards Regression
- Decision Trees (xgBoost, gradient boosting)
- Dunn's test
- DESeq2
- edgeR
- Fisher's Exact Test
- Fold-change cutoff
- Jonckheere's trend test
- Kolmogorov-Smirnov Test
- Kruskall-Wallis
- LASSO Regression
- LEfSe
- Linear Discriminant Analysis
- Linear Regression
- Logistic Regression
- Mann-Whitney (Wilcoxon)
- MaAsLin2
- metagenomeSeq
- Metastats
- Mixed-Effects Regression
- Negative Binomial Regression
- NLMIXED
- Pearson Correlation
- PERMANOVA
- PLS-DA (Partial least square discriminant analysis)
- Random Forest Analysis
- Sparse Correlations for Compositional data (SparCC)
- Spearman Correlation
- Structural Equation Modeling (SEM)
- T-Test
- treeDA
- Wald Test
- Welch's T-Test
- Zero-Inflated Beta Regression
- Zero-Inflated Negative Binomial Regression
0–9
ANOVA +
Mann-Whitney (Wilcoxon) +
16S rRNA amplicon sequencing identifies microbiota associated with oral cancer, human papilloma virus infection and surgical treatment/Experiment 1 +
LEfSe +
16S rRNA amplicon sequencing identifies microbiota associated with oral cancer, human papilloma virus infection and surgical treatment/Experiment 2 +
LEfSe +
16S rRNA amplicon sequencing identifies microbiota associated with oral cancer, human papilloma virus infection and surgical treatment/Experiment 3 +
LEfSe +
16S rRNA and metagenomic shotgun sequencing data revealed consistent patterns of gut microbiome signature in pediatric ulcerative colitis/Experiment 1 +
Mann-Whitney (Wilcoxon) +
16S rRNA gene amplicon sequencing of gut microbiota in gestational diabetes mellitus and their correlation with disease risk factors/Experiment 1 +
LEfSe +
16S rRNA gene pyrosequencing reveals shift in patient faecal microbiota during high-dose chemotherapy as conditioning regimen for bone marrow transplantation/Experiment 1 +
Mann-Whitney (Wilcoxon) +
16S rRNA gene sequencing reveals altered composition of gut microbiota in individuals with kidney stones/Experiment 1 +
LEfSe +
16S rRNA gene sequencing reveals altered composition of gut microbiota in individuals with kidney stones/Experiment 2 +
Mann-Whitney (Wilcoxon) +
16S rRNA gene sequencing reveals altered gut microbiota in young adults with schizophrenia and prominent negative symptoms/Experiment 1 +
LEfSe +
16S rRNA gene sequencing reveals altered gut microbiota in young adults with schizophrenia and prominent negative symptoms/Experiment 2 +
LEfSe +
A
A Combined Analysis of Gut and Skin Microbiota in Infants with Food Allergy and Atopic Dermatitis: A Pilot Study/Experiment 1 +
Kruskall-Wallis +
A Combined Analysis of Gut and Skin Microbiota in Infants with Food Allergy and Atopic Dermatitis: A Pilot Study/Experiment 2 +
Kruskall-Wallis +
A Combined Analysis of Gut and Skin Microbiota in Infants with Food Allergy and Atopic Dermatitis: A Pilot Study/Experiment 3 +
Kruskall-Wallis +
Showing 10 related entities (more are available).
B
- Body site-typical microbiome signatures for adults/Experiment 2 +
- Body site-typical microbiome signatures for adults/Experiment 4 +
- Body site-typical microbiome signatures for adults/Experiment 7 +
- Body site-typical microbiome signatures for adults/Experiment 10 +
- Body site-typical microbiome signatures for adults/Experiment 1 +
- ...
F
- Fecal Microbiota Composition, Their Interactions, and Metagenome Function in US Adults with Type 2 Diabetes According to Enterotypes/Experiment 1 +
- Fecal Microbiota Composition, Their Interactions, and Metagenome Function in US Adults with Type 2 Diabetes According to Enterotypes/Experiment 2 +
- Fecal Microbiota Composition, Their Interactions, and Metagenome Function in US Adults with Type 2 Diabetes According to Enterotypes/Experiment 3 +
- Fecal Microbiota Composition, Their Interactions, and Metagenome Function in US Adults with Type 2 Diabetes According to Enterotypes/Experiment 4 +
M
{ "type": "PROPERTY_CONSTRAINT_SCHEMA", "constraints": { "type_constraint": "_txt", "allowed_values": [ "ANCOM", "ANOSIM", "ANOVA", "Beta Binomial Regression", "Chi-Square", "Cox Proportional-Hazards Regression", "Dunn's test", "DESeq2", "edgeR", "Fisher's Exact Test", "Fold-change cutoff", "Kolmogorov-Smirnov Test", "Kruskall-Wallis", "LASSO Regression", "LEfSe", "Linear Regression", "Logistic Regression", "Mann-Whitney (Wilcoxon)", "MaAsLin2", "metagenomeSeq", "Metastats", "Mixed-Effects Regression", "Negative Binomial Regression", "NLMIXED", "Pearson Correlation", "PERMANOVA", "PLS-DA (Partial least square discriminant analysis)", "Random Forest Analysis", "Spearman Correlation", "Structural Equation Modeling (SEM)", "T-Test", "Wald Test", "Welch's T-Test", "Zero-Inflated Beta Regression", "Zero-Inflated Negative Binomial Regression", "Jonckheere's trend test", "ANCOM-BC", "treeDA", "Decision Trees (xgBoost, gradient boosting)", "Linear Discriminant Analysis", "ANCOM-BC2", "Sparse Correlations for Compositional data (SparCC)" ] } }
