Body site-typical microbiome signatures for adults/Experiment 4

EditHistoryDelete

Flag for review

Your review change was submittedDuplicate this ExperimentAdd a new Signature

Reviewed Marked as Reviewed by Lwaldron on 2022/08/24

Curated date: 2021/12/08

Curator: Haoyanzh

Revision editor(s): Haoyanzh, Lwaldron, WikiWorks

Subjects

Location of subjects

United States of America

Host species Species from which microbiome was sampled. Contact us to have more species added.

Homo sapiens

Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology

Nasal cavity Cavitas nasalis,Cavitas nasi,Cavity of nose,Cavity of olfactory apparatus,Cavum nasi,Nasal canal,Nasal conduit space,Nasal fossa,Nasal pit,Olfactory cavity,Olfactory chamber,Olfactory chamber cavity,Olfactory pit,Nasal cavity,nasal cavity

Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology

Health study participation health questionnaire participation,health survey participation,Health study participation,health study participation

Group 0 name Corresponds to the control (unexposed) group for case-control studies

none - 50% prevalence threshold

Group 1 name Corresponds to the case (exposed) group for case-control studies

nasal cavity from healthy adult

Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group

non-disease adult participants from curatedMetagenomicData

Group 0 sample size Number of subjects in the control (unexposed) group

0

Group 1 sample size Number of subjects in the case (exposed) group

92

Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)

Unknown

Lab analysis

Sequencing type

WMS

16S variable region One or more hypervariable region(s) of the bacterial 16S gene

Not specified

Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance

Illumina

Statistical Analysis

Statistical test

prevalence > 50% Statistical test: "prevalence > 50%" is not in the list (ANCOM, ANOSIM, ANOVA, Beta Binomial Regression, Chi-Square, Cox Proportional-Hazards Regression, Dunn's test, DESeq2, edgeR, Fisher's Exact Test, ...) of allowed values.

Signature 1

EditHistoryDelete

Flag for review

Your review change was submitted

Reviewed Marked as Reviewed by Lwaldron on 2022/08/25

Curated date: 2021/12/08

Curator: Haoyanzh

Revision editor(s): Haoyanzh

Source: 10.5281/zenodo.5565690

Description: healthy adult nasal cavity genus in >=50% samples

Abundance in Group 1:

NCBI	Quality Control	Links
Cutibacterium
Staphylococcus
Corynebacterium
Malassezia

Revision editor(s): Haoyanzh

Signature 2

EditHistoryDelete

Flag for review

Your review change was submitted

Reviewed Marked as Reviewed by Lwaldron on 2022/08/25

Curated date: 2021/12/08

Curator: Haoyanzh

Revision editor(s): Haoyanzh

Source: 10.5281/zenodo.5565690

Description: healthy adult nasal cavity species in >=50% samples

Abundance in Group 1:

NCBI	Quality Control	Links
Cutibacterium acnes
Staphylococcus epidermidis
Corynebacterium accolens
Malassezia restricta
Cutibacterium granulosum

Revision editor(s): Haoyanzh