Body site-typical microbiome signatures for adults/Experiment 9

From BugSigDB


Reviewed Marked as Reviewed by Lwaldron on 2022/08/26

Curated date: 2022/01/27

Curator: Haoyanzh

Revision editor(s): Haoyanzh, Lwaldron

Subjects

Location of subjects
Australia
Canada
China
Denmark
Finland
France
Germany
India
Ireland
Israel
Italy
Japan
Luxembourg
Netherlands
South Korea
Spain
Switzerland
United Kingdom
United Republic of Tanzania
United States of America
Host species Species from which microbiome was sampled. Contact us to have more species added.
Homo sapiens
Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
Health study participation health questionnaire participation,health survey participation,Health study participation,health study participation
Group 0 name Corresponds to the control (unexposed) group for case-control studies
none - 70% prevalence threshold
Group 1 name Corresponds to the case (exposed) group for case-control studies
feces from healthy adult
Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
non-disease adult participants from curatedMetagenomicData
Group 0 sample size Number of subjects in the control (unexposed) group
0
Group 1 sample size Number of subjects in the case (exposed) group
9623
Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
no (n=5572), yes (n=276)

Lab analysis

Sequencing type
WMS
16S variable region One or more hypervariable region(s) of the bacterial 16S gene
Not specified
Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
Illumina

Statistical Analysis

Statistical test
prevalence > 70% Statistical test: "prevalence > 70%" is not in the list (ANCOM, ANOSIM, ANOVA, Beta Binomial Regression, Chi-Square, Cox Proportional-Hazards Regression, Dunn's test, DESeq2, edgeR, Fisher's Exact Test, ...) of allowed values.


Signature 1

Reviewed Marked as Reviewed by Lwaldron on 2022/08/26

Curated date: 2022/01/27

Curator: Haoyanzh

Revision editor(s): Haoyanzh

Source: 10.5281/zenodo.5565690

Description: healthy adult stool genus in >= 70% samples

Abundance in Group 1:
NCBI Quality ControlLinks
Adlercreutzia
Agathobaculum
Alistipes
Anaerobutyricum
Anaerostipes
Bacteroides
Bifidobacterium
Blautia
Clostridium
Collinsella
Coprococcus
Dorea
Eubacterium
Faecalibacterium
Flavonifractor
Fusicatenibacter
Gemmiger
Lachnospira
Mediterraneibacter
Odoribacter
Oscillibacter
Parabacteroides
Phocaeicola
Roseburia
Ruminococcus
Streptococcus
Ruthenibacterium

Revision editor(s): Haoyanzh

Signature 2

Reviewed Marked as Reviewed by Lwaldron on 2022/08/26

Curated date: 2022/01/27

Curator: Haoyanzh

Revision editor(s): Haoyanzh

Source: 10.5281/zenodo.5565690

Description: healthy adult stool species in >= 70% samples

Abundance in Group 1:
NCBI Quality ControlLinks
Faecalibacterium prausnitzii
Fusicatenibacter saccharivorans
Bacteroides uniformis
Agathobacter rectalis
Blautia wexlerae
Anaerostipes hadrus
Agathobaculum butyriciproducens
Dorea longicatena
Anaerobutyricum hallii
Dorea formicigenerans
Collinsella aerofaciens
Phocaeicola vulgatus
Blautia obeum
Roseburia inulinivorans
Parabacteroides distasonis
Gemmiger formicilis
Coprococcus comes
Ruthenibacterium lactatiformans
Roseburia hominis
Lachnospira eligens
[Ruminococcus] torques
Roseburia faecis
Bacteroides ovatus
Odoribacter splanchnicus
Alistipes putredinis
Coprococcus catus
Firmicutes bacterium CAG:83
Streptococcus salivarius
Bifidobacterium longum
Bacteroides thetaiotaomicron
Alistipes finegoldii
Eubacterium ramulus
Oscillibacter sp. 57_20
Alistipes shahii
Roseburia intestinalis
Flavonifractor plautii

Revision editor(s): Haoyanzh