Study information
-
Quality control
- Retracted paper
- Contamination issues suspected
- Batch effect issues suspected
- Uncontrolled confounding suspected
- Results are suspect (various reasons)
- Tags applied
study design
Citation
PMID PubMed identifier for scientific articles.
DOI Digital object identifier for electronic documents.
URI Uniform resource identifier for web resources.
Authors
Journal
Year
Pages:
First page:
Keywords:
Using the curatedMetagenomicData Biocondutor package (>=3.2.1): we calculated taxa prevalence of healthy child control samples for each body site and at species/genus levels. Lists of typical healthy signatures were provided for each body site at species/genus level.
For body site-typical microbiome signatures for adults, please go to: https://bugsigdb.org/Study_562
Experiment 1
Reviewed Marked as Reviewed by Lwaldron on 2023-2-8
Subjects
- Location of subjects
- Italy
- United States of America
- Host species Species from which microbiome was sampled (if applicable)
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Oral cavity Bucca,Buccal cavity,Cavity of mouth,Oral cavity
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- health study participation health questionnaire participation,health survey participation,health study participation
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- none
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- healthy child oral 50% up
- Group 1 sample size Number of subjects in the case (exposed) group
- 81
Lab analysis
- Sequencing type
- 16S
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Statistical test
- prevalence>=50% "prevalence>=50%" is not in the list (ANCOM, ANOSIM, ANOVA, DESeq2, edgeR, Fisher's Exact Test, Kruskall-Wallis, LEfSe, Linear Regression, Logistic Regression, ...) of allowed values for the "Statistical test" property.
Signature 1
Reviewed Marked as Reviewed by Lwaldron on 2022/05/25
Source: 10.5281/zenodo.5565690
Description: healthy child oral genus in >=50% study samples
Abundance in Group 1:
NCBI | Links |
---|---|
Streptococcus | |
Rothia | |
Veillonella | |
Prevotella | |
Gemella | |
Neisseria | |
Haemophilus |
Revision editor(s): Haoyanzh
Signature 2
Reviewed Marked as Reviewed by Lwaldron on 2022/05/25
Source: 10.5281/zenodo.5565690
Description: healthy child oral species in >= 50% samples
Abundance in Group 1:
Revision editor(s): Haoyanzh
Experiment 2
Needs review
Subjects
- Location of subjects
- Bangladesh
- China
- Estonia
- Finland
- Germany
- India
- Ireland
- Italy
- Luxembourg
- Netherlands
- Russian Federation
- Spain
- Sweden
- United Kingdom
- United Republic of Tanzania
- United States of America
- Host species Species from which microbiome was sampled (if applicable)
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- health study participation health questionnaire participation,health survey participation,health study participation
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- none
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- healthy child stool 50% up
- Group 1 sample size Number of subjects in the case (exposed) group
- 3375
Lab analysis
- Sequencing type
- 16S
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Statistical test
- prevalance>=50% "prevalance>=50%" is not in the list (ANCOM, ANOSIM, ANOVA, DESeq2, edgeR, Fisher's Exact Test, Kruskall-Wallis, LEfSe, Linear Regression, Logistic Regression, ...) of allowed values for the "Statistical test" property.
Signature 1
Source: 10.5281/zenodo.5565690
Description: healthy child stool genus in >= 50% samples
Abundance in Group 1:
NCBI | Links |
---|---|
Streptococcus | |
Bifidobacterium | |
Escherichia | |
Veillonella | |
Bacteroides | |
Calvatia complutensis | |
Enterococcus | |
Clostridium | |
Mediterraneibacter |
Revision editor(s): Haoyanzh
Signature 2
Source: 10.5281/zenodo.5565690
Description: healthy child stool species in >= 50% samples
Abundance in Group 1:
NCBI | Links |
---|---|
Bifidobacterium longum | |
Streptococcus salivarius | |
Escherichia coli | |
Streptococcus parasanguinis |
Revision editor(s): Haoyanzh
Retrieved from "https://bugsigdb.org/w/index.php?title=Study_608&oldid=105965"
Hidden category: