Depicting the landscape of gut microbial-metabolic interaction and microbial-host immune heterogeneity in deficient and proficient DNA mismatch repair colorectal cancers/Experiment 1/Signature 1

From BugSigDB
Reviewed Marked as Reviewed by Folakunmi on 2024-1-19

Curated date: 2023/10/16

Curator: ChiomaBlessing

Revision editor(s): ChiomaBlessing

Source: Table S2, Figure 2c

Description: Differential microbial abundance between deficient DNA mismatch repair (dMMR) and proficient DNA mismatch repair (pMMR) in CRC

Abundance in Group 1: increased abundance in deficient DNA mismatch repair (dMMR) CRC

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Achromobacter sp. AONIH1
Acidithiobacillus ferrivorans
Acidovorax sp. RAC01
Actinoalloteichus hoggarensis
Akkermansia muciniphila
Aminobacter aminovorans
Aminobacter sp. MSH1
Amycolatopsis albispora
Anaerotignum propionicum
Aquitalea sp. USM4
Arcticibacterium luteifluviistationis
Azoarcus sp. DN11
Azoarcus sp. KH32C
Azospira oryzae
Azospirillum brasilense
Azospirillum sp. TSH100
Azospirillum thermophilum
Bacillus velezensis
Bacteroidales bacterium CF
Barnesiella viscericola
Bifidobacterium angulatum
Bordetella genomosp. 8
Bradyrhizobium diazoefficiens
Bradyrhizobium erythrophlei
Bradyrhizobium guangdongense
Bradyrhizobium lablabi
Trinickia violacea
Burkholderia stabilis
Burkholderia thailandensis
Burkholderiales bacterium JOSHI_001
Candidatus Azobacteroides pseudotrichonymphae
Candidatus Desulfovibrio trichonymphae
Capnocytophaga haemolytica
Caulobacter flavus
Cereibacter sphaeroides
Christiangramia fulva
Chromobacterium violaceum
Chryseobacterium shandongense
Chryseobacterium sp. 6424
Collimonas pratensis
Collinsella aerofaciens
Coriobacterium glomerans
Corynebacterium jeikeium
Croceicoccus naphthovorans
Cupriavidus metallidurans
Cupriavidus necator
Cupriavidus taiwanensis
Deinococcus actinosclerus
Desulfatibacillum aliphaticivorans
Desulfobulbus oralis
Desulfococcus multivorans
Desulfocurvibacter africanus
Desulfomicrobium baculatum
Desulfotomaculum nigrificans
Desulfovibrio desulfuricans
Desulfovibrio sp. G11
Nitratidesulfovibrio vulgaris
Devosia sp. A16
Dickeya chrysanthemi
Dickeya fangzhongdai
Dyadobacter fermentans
Eikenella corrodens
Elizabethkingia miricola
Ensifer adhaerens
Enterobacter asburiae
Enterobacter bugandensis
Enterobacter cloacae complex sp.
Enterobacter hormaechei
Enterococcus faecalis
Enterococcus gilvus
Erythrobacter litoralis
Ferrimonas balearica
Filifactor alocis
Fluviicola taffensis
Frigidibacter mobilis
Fusobacterium nucleatum
Geoalkalibacter subterraneus
Geobacter sp. M18
Geobacter sp. M21
Geobacter sulfurreducens
Geotalea daltonii
Gluconobacter oxydans
Gordonia sp. YC-JH1
Gordonibacter massiliensis (ex Traore et al. 2017)
Gordonibacter pamelaeae
Gordonibacter urolithinfaciens
Halobacillus halophilus
Helicobacter pylori
Hoylesella enoeca
Hymenobacter psoromatis
Hymenobacter radiodurans
Hymenobacter sedentarius
Hymenobacter sp. APR13
Hymenobacter sp. DG25A
Hymenobacter sp. DG25B
Immundisolibacter cernigliae
Kiritimatiella glycovorans
Kitasatospora sp. MMS16-BH015
Lactiplantibacillus pentosus
Lautropia mirabilis
Magnetospirillum gryphiswaldense
Paramagnetospirillum magneticum
Marinobacter nauticus
Marinobacterium aestuarii
Martelella endophytica
Massilia oculi
Massilia sp. YMA4
Massilia violaceinigra
Megalodesulfovibrio gigas
Mesorhizobium ciceri
Mesorhizobium loti
Mesorhizobium sp. Pch-S
Microvirga sp. 17 mud 1-3
Microvirgula aerodenitrificans
Mucilaginibacter sp. PAMC 26640
Muribaculum intestinale
Neisseria animaloris
Neisseria meningitidis
Neobacillus mesonae
Nocardiopsis dassonvillei
Novosphingobium resinovorum
Odoribacter splanchnicus
Oleidesulfovibrio alaskensis
Opitutaceae bacterium TAV5
Paenibacillus chitinolyticus
Paenibacillus ihbetae
Paenibacillus kribbensis
Paenibacillus larvae
Paenibacillus lutimineralis
Paenibacillus polymyxa
Paenibacillus sp. CAA11
Paludisphaera borealis
Pandoraea oxalativorans
Pandoraea sp. XY-2
Pantoea agglomerans
Pantoea vagans
Paraburkholderia terrae
Paraburkholderia xenovorans
Parvibaculum lavamentivorans
Paucibacter sp. KCTC 42545
Pectobacterium carotovorum
Pelobacter propionicus
Pelodictyon luteolum
Peptoniphilus ivorii
Phaeobacter gallaeciensis
Phreatobacter cathodiphilus
Pigmentiphaga sp. H8
Planctomyces sp. SH-PL62
Porphyromonas cangingivalis
Porphyromonas crevioricanis
Prevotella dentalis
Prevotella intermedia
Pseudodesulfovibrio aespoeensis
Pseudodesulfovibrio profundus
Pseudoduganella armeniaca
Pseudomonas brassicacearum
Pseudomonas entomophila
Pseudomonas fluorescens
Pseudomonas knackmussii
Pseudomonas oryzae
Pseudomonas protegens
Pseudomonas sp. LTJR-52
Rhizobium etli
Rhizobium jaguaris
Rhodobacter xanthinilyticus
Rhodopseudomonas palustris
Rhodothermaceae bacterium
Rothia dentocariosa
Rufibacter radiotolerans
Runella rosea
Salinibacter ruber
Salipiger profundus
Sandaracinus amylolyticus
Selenomonas sputigena
Serratia fonticola
Serratia marcescens
Sinorhizobium fredii
Sinorhizobium meliloti
Sinorhizobium sp. RAC02
Sphaerochaeta globosa
Sphingobium baderi
Spirochaeta africana
Spirosoma pollinicola
Spirosoma radiotolerans
Staphylospora marina
Streptococcus equi
Streptococcus intermedius
Streptococcus lutetiensis
Streptococcus sanguinis
Streptomyces bingchenggensis
Streptomyces cadmiisoli
Streptomyces dengpaensis
Streptomyces olivoreticuli
Streptomyces sp. endophyte_N2
Stutzerimonas stutzeri
Sulfurivermis fontis
Syntrophobacter fumaroxidans
Syntrophotalea acetylenica
Tannerella serpentiformis
Thauera humireducens
Thiobacillus denitrificans
Thiomonas intermedia
Tistrella mobilis
Tumebacillus avium
Turicibacter sp. H121
Variovorax sp. HW608
Variovorax sp. PMC12
Victivallales bacterium CCUG 44730
Xanthobacter autotrophicus
Xanthomonas translucens

Revision editor(s): ChiomaBlessing