Geography, niches, and transportation influence bovine respiratory microbiome and health/Experiment 9/Signature 1

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Reviewed Marked as Reviewed by ChiomaBlessing on 2024-1-28

Curated date: 2023/11/15

Curator: Folakunmi

Revision editor(s): Folakunmi, Davvve, ChiomaBlessing

Source: supplementary figure S4

Description: abundant taxa in calves at 7 days after placement and adaptive feeding after long distance transportation. LefSe was used to identify the longitudinal changes of microbiota from the studies of Cui et al. (2021) and Malmuthuge et al. (2021), following transportation.

Abundance in Group 1: increased abundance in 7 days after placement and adaptive feeding(long distance)

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Acetivibrio thermocellus
Aerococcus viridans
Agathobacter rectalis
Agrobacterium tumefaciens
Arthrobacter sp. FB24
Brevundimonas subvibrioides
Carnobacterium sp. AT7
Caulobacter vibrioides
Clostridium botulinum
Corynebacterium ammoniagenes
Corynebacterium amycolatum
Corynebacterium aurimucosum
Corynebacterium diphtheriae
Corynebacterium efficiens
Corynebacterium jeikeium
Enterococcus faecium
Escherichia coli
Kocuria rhizophila
Lachnoclostridium phytofermentans
Lacrimispora saccharolytica
Macrococcoides caseolyticum
Mesomycoplasma conjunctivae
Mesomycoplasma hyopneumoniae
Mesomycoplasma hyorhinis
Nocardioides sp. JS614
Pseudoflavonifractor capillosus
Ectopseudomonas mendocina
Rhizobium leguminosarum
Rhodopseudomonas palustris
Ruminococcaceae bacterium D16
Ruminococcus albus
Saccharopolyspora erythraea
Staphylococcus aureus
Staphylococcus epidermidis
Staphylococcus saprophyticus
Stutzerimonas stutzeri
Butyrivibrio proteoclasticus

Revision editor(s): Folakunmi, Davvve, ChiomaBlessing