Microbiome features associated with performance measures in athletic and non-athletic individuals: A case-control study/Experiment 6
From BugSigDB
Reviewed Marked as Reviewed by Folakunmi on 2024-3-19
Subjects
- Location of subjects
- Poland
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Health study participation health questionnaire participation,health survey participation,Health study participation,health study participation
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Non-athletes
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Endurance athletes
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Athletes engaged in endurance athletics at timepoint W2 (morning fasting after the WT on an empty stomach)
- Group 0 sample size Number of subjects in the control (unexposed) group
- 19
- Group 1 sample size Number of subjects in the case (exposed) group
- 13
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- Individuals who were on antibiotics six (6) months before the start of the study.
Lab analysis
- Sequencing type
- PCR
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- Not specified
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- LEfSe
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
- LDA Score above Threshold for the linear discriminant analysis (LDA) score for studies using the popular LEfSe tool
- 2.0
- Confounders controlled for Confounding factors that have been accounted for by stratification or model adjustment
- diet
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
- Richness Number of species
- unchanged
Signature 1
Reviewed Marked as Reviewed by Folakunmi on 2024-3-18
Source: Table 2
Description: Species identified as specific per group after being identified as significantly more abundant in the group of interest in comparison to the other two groups by LEfSe at Timepoint W2 (morning fasting after the WT on an empty stomach)
Abundance in Group 1: increased abundance in Endurance athletes
| NCBI | Quality Control | Links |
|---|---|---|
| Blautia sp. AF19-10LB |
Revision editor(s): Aleru Divine, Folakunmi
Signature 2
Reviewed Marked as Reviewed by Folakunmi on 2024-3-18
Source: Table 2
Description: Species identified as specific per group after being identified as significantly more abundant in the group of interest in comparison to the other two groups by LEfSe at Timepoint W2 (morning fasting after the WT on an empty stomach)
Abundance in Group 1: decreased abundance in Endurance athletes
| NCBI | Quality Control | Links |
|---|---|---|
| Phocaeicola massiliensis |
Revision editor(s): Aleru Divine, Folakunmi
