Study 919

Study information

incomplete

study design

Citation

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DOI Digital object identifier for electronic documents.

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Authors

Journal

Year

Experiment 1

Needs review

Curated date: 2024/03/08

Curator: Bolanle

Revision editor(s): Bolanle

Host species Species from which microbiome was sampled. Contact us to have more species added.: Salmo salar

Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology: Intestine Bowel,Intestinal tract,Intestine,intestine

Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology: Diet Dietary,Diets,Diet,diet

Group 0 name Corresponds to the control (unexposed) group for case-control studies: Reference group

Group 1 name Corresponds to the case (exposed) group for case-control studies: Test group

Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group: Atlantic Salmon fed with Yeast cell-wall based prebiotics diet in January, April and September with average water temperature of 3.9, 3.4 and 9.6 respectively.

16S variable region One or more hypervariable region(s) of the bacterial 16S gene: V1-V2

Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance: Illumina

Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).: raw counts

Significance threshold p-value or FDR threshold used for differential abundance testing (if any): 0.05

MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?: No

LDA Score above Threshold for the linear discriminant analysis (LDA) score for studies using the popular LEfSe tool: 2

Matched on Factors on which subjects have been matched on in a case-control study: diet, time

Confounders controlled for Confounding factors that have been accounted for by stratification or model adjustment: body mass index, body weight, diet, health