Effects of removing in-feed antibiotics and zinc oxide on the taxonomy and functionality of the microbiota in post weaning pigs/Experiment 11/Signature 1

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Curated date: 2024/04/27

Curator: Fiddyhamma

Revision editor(s): Fiddyhamma

Source: Fig 5D, Suppl fig 4 and text

Description: Taxa associated with each dietary treatment in the analysis of Faecal_14dpw data. Significant species are coloured according to the treatment to which they are associated to, and are annotated in the cladogram as letters, which can be identified below it.

Abundance in Group 1: decreased abundance in Diarrhoea_14pw CT(no medication) group

NCBI	Quality Control	Links
Acidaminococcus intestini
Clostridium sporogenes
Desulfovibrio fairfieldensis
Dialister massiliensis
Escherichia coli
Intestinibaculum porci
Lactobacillus delbrueckii
Megamonas hypermegale
Megasphaera elsdenii
Megasphaera hexanoica
Megasphaera stantonii
Methylomusa anaerophila
Pelosinus fermentans
Petrocella atlantisensis
Ruminococcus bicirculans (ex Liu et al. 2021)
Selenomonas ruminantium
Selenomonas sp. oral taxon 920
Selenomonas sputigena
Desulfovibrio piger
Pseudomonadota
Gammaproteobacteria
Deltaproteobacteria
Escherichia
Megasphaera
Negativicutes
Veillonellales
Veillonellaceae
Vallitaleaceae
Enterobacterales
Desulfovibrionales
Desulfovibrionaceae
Sporomusaceae
Selenomonadales
Selenomonadaceae
Enterobacteriaceae

Revision editor(s): Fiddyhamma