32488167/Experiment 2: Difference between revisions
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|Location of subjects=United States of America | |Location of subjects=United States of America | ||
|Host species=Homo sapiens | |Host species=Homo sapiens | ||
|Body site= | |Body site=Vagina | ||
|Condition= | |Condition=gestational age | ||
|Group 0 name= | |Group 0 name=36 | ||
|Group 1 name=Birth | |Group 1 name=Birth | ||
|Group 1 definition= | |Group 1 definition=birth timepoint | ||
|Group 0 sample size= | |Group 0 sample size=57 | ||
|Group 1 sample size=57 | |Group 1 sample size=57 | ||
|Sequencing type=16S | |Sequencing type=16S | ||
| Line 16: | Line 16: | ||
|Significance threshold=0.05 | |Significance threshold=0.05 | ||
|MHT correction=Yes | |MHT correction=Yes | ||
| | |Shannon=unchanged | ||
|State=Complete | |State=Complete | ||
}} | }} | ||
Latest revision as of 22:04, 16 February 2025
Reviewed Marked as Reviewed by Claregrieve1 on 2022/08/30
Curated date: 2021/11/14
Curator: Joyessa
Revision editor(s): WikiWorks, LGeistlinger, Claregrieve1, Joyessa
Subjects
- Location of subjects
- United States of America
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Vagina Distal oviductal region,Distal portion of oviduct,Vaginae,Vagina,vagina
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Gestational age Gestational age,gestational age
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- 36
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Birth
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- birth timepoint
- Group 0 sample size Number of subjects in the control (unexposed) group
- 57
- Group 1 sample size Number of subjects in the case (exposed) group
- 57
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V4
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Statistical test
- Kruskall-Wallis
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
Signature 1
Reviewed Marked as Reviewed by Claregrieve1 on 2022/08/30
Source: Figure 3
Description: Differentially abundant microbial taxa between the 36 week timepoint and birth timepoint
Abundance in Group 1: increased abundance in Birth
| NCBI | Quality Control | Links |
|---|---|---|
| Corynebacterium | ||
| Enterococcus | ||
| Gemella | ||
| Moraxella | ||
| Staphylococcus | ||
| Streptococcus |
Revision editor(s): Joyessa, Claregrieve1, WikiWorks
Signature 2
Reviewed Marked as Reviewed by Claregrieve1 on 2022/08/30
Source: Figure 3
Description: Differentially abundant microbial taxa between the 36 week timepoint and birth timepoint
Abundance in Group 1: decreased abundance in Birth
| NCBI | Quality Control | Links |
|---|---|---|
| Lactobacillus |
Revision editor(s): Claregrieve1, WikiWorks
