Uncovering Microbial Composition in Human Breast Cancer Primary Tumour Tissue Using Transcriptomic RNA-seq/Experiment 1/Signature 2

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Curated date: 2025/06/22

Curator: Ecsharp

Revision editor(s): Ecsharp

Source: Figure 3 (A)

Description: Differentially represented taxa between normal breast tissue samples (from cancer-free donors) and breast tumour tissue. (A) Comparison of the microbiome in primary tumours of Slovak patients and normal breast tissue of Slovak cancer-free donors. Since standard conditions identified too many results, to visualise data, LEfSe was run with parameters (LDA > 3, Kruskal Wallis testp-value < 0.05, Wilcoxon testp-value < 0.05)

Abundance in Group 1: decreased abundance in breast cancer tumor tissue

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Bacteroidia
Cytophagia
Cytophagales
Hymenobacteraceae
Hymenobacter
Paenibacillaceae
Bacteroidaceae
Bacteroides
Paenibacillus
Coriobacteriia
Bifidobacterium
Hymenobacter psoromatis
Coriobacteriales
Coriobacteriaceae
Collinsella
Collinsella aerofaciens
Hymenobacter sp. BRD128
Hymenobacter sedentarius
Bifidobacterium adolescentis
Microlunatus
Oscillospiraceae
Paenibacillus bovis
Microlunatus sagamiharensis
Sphingobacteriaceae
Sphingobacteriia
Sphingobacteriales
Oscillibacter

Revision editor(s): Ecsharp