Uncovering Microbial Composition in Human Breast Cancer Primary Tumour Tissue Using Transcriptomic RNA-seq/Experiment 2/Signature 2

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Curated date: 2025/06/24

Curator: Ecsharp

Revision editor(s): Ecsharp

Source: Figure 3 (B)

Description: Differentially represented taxa between normal breast tissue samples and breast tumour tissue. (B) Comparison of microbiome in primary tumours of 72 patients from China and 18 normal breast tissues of cancer-free donors from China. For visualisation, LEfSe was run with parameters (LDA > 5.5, Kruskal Wallis test p-value < 0.05, Wilcoxon test p-value < 0.05), for the purpose of visualising the best hits.

Abundance in Group 1: decreased abundance in triple-negative breast cancer tumor tissue

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Bacillati
Bacilli
Lactobacillales
Lactobacillaceae
Lacticaseibacillus
Pseudomonadota
Gammaproteobacteria
Lacticaseibacillus rhamnosus
Lysobacterales
Lysobacteraceae
Alphaproteobacteria
Xanthomonas
Hyphomicrobiales
Pseudomonadales
Pasteurellales
Pasteurellaceae
Pasteurella
Pasteurella multocida
Moraxellaceae
Actinomycetota
Actinomycetes
Cyanobacteriota
Phyllobacteriaceae
Xanthomonas oryzae
Acinetobacter
Mesorhizobium
Moraxella
Clostridiaceae
Clostridia
Eubacteriales
Clostridium
Faucicola osloensis
Pseudomonadaceae
Pseudomonas
Mycobacteriales
Bacteroidota
Nitratireductor
Rhodobacterales
Paracoccaceae
Pseudonocardiales
Pseudonocardiaceae
Clostridium botulinum
Propionibacteriales
Lactiplantibacillus
Lactiplantibacillus plantarum

Revision editor(s): Ecsharp