Uncovering Microbial Composition in Human Breast Cancer Primary Tumour Tissue Using Transcriptomic RNA-seq/Experiment 5/Signature 1
From BugSigDB
Source: Figure 4 (C)
Description: Differentially represented taxa in primary tumour tissues of Slovak patients between multiple markers statuses. For all comparisons, LEfSe was run with parameters: LDA > 3 (stricter than default LDA > 2 just for purpose of visualisation), Kruskal Wallis test p-value < 0.05, Wilcoxon test p-value < 0.05. (C) Comparison of the microbiome in primary tumours of patients positive on HER2 marker and negative on HER2 marker status.
Abundance in Group 1: increased abundance in HER2+ BC patients
| NCBI | Quality Control | Links |
|---|---|---|
| Helicobacter pylori | ||
| Musicola paradisiaca | ||
| Pseudactinotalea sp. HY158 | ||
| Paraburkholderia fungorum | ||
| Massilia oculi | ||
| Burkholderiales | ||
| Betaproteobacteria |
Revision editor(s): Ecsharp
