Surgery-induced gut microbial dysbiosis promotes cognitive impairment via regulation of intestinal function and the metabolite palmitic amide/Experiment 8

From BugSigDB


Needs review

Curated date: 2025/04/30

Curator: MyleeeA

Revision editor(s): MyleeeA

Subjects

Location of subjects
China
Host species Species from which microbiome was sampled. Contact us to have more species added.
Mus musculus
Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
Age Age,age
Group 0 name Corresponds to the control (unexposed) group for case-control studies
Aged, Young+surgery before, Young+surgery after, Aged+surgery before and Aged+surgery after
Group 1 name Corresponds to the case (exposed) group for case-control studies
Young
Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
Adult male C57BL/6 mice 2 months old were grouped as Young.

Lab analysis

Sequencing type
16S
16S variable region One or more hypervariable region(s) of the bacterial 16S gene
V3-V4
Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
Illumina

Statistical Analysis

Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
relative abundances
Statistical test
LEfSe
Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
0.05
MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
No
LDA Score above Threshold for the linear discriminant analysis (LDA) score for studies using the popular LEfSe tool
2


Signature 1

Needs review

Curated date: 2025/05/01

Curator: MyleeeA

Revision editor(s): MyleeeA

Source: Supplementary Figure 2F

Description: Linear discriminant analysis Efect Size (LEfSe) was used to find species with significant differences at all taxonomic levels of the gut microbiota in the feces of Young, Aged, Young+surgery before, Young+surgery after, Aged+surgery before and Aged+surgery after groups of mice

Abundance in Group 1: increased abundance in Young

NCBI Quality ControlLinks
SynechococcophycideaeSynechococcophycideae
Streptophyta
Synechococcales
ThiobacteralesThiobacterales
ParaprevotellaceaeParaprevotellaceae
Prevotellaceae
Synechococcaceae
Prevotella
Paraprevotella
Bacillus
Synechococcus
Caryophanaceae

Revision editor(s): MyleeeA