Property:Data transformation

This is a property of type Text. Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any). (en)

Allowed values[edit source]

Edit list

raw counts
relative abundances
centered log-ratio
arcsine square-root
log transformation

Usage2454Constraint schema

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Showing 20 pages using this property.

L

Longitudinal disease-associated gut microbiome differences in infants with food protein-induced allergic proctocolitis/Experiment 1 +

arcsine square-root +

D

Development of the oral resistome during the first decade of life/Experiment 1 +

arcsine square-root +

I

Integrated Multi-Cohort Analysis of the Parkinson's Disease Gut Metagenome/Experiment 2 +

arcsine square-root +

T

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 11 +

arcsine square-root +

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 13 +

arcsine square-root +

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 15 +

arcsine square-root +

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 20 +

arcsine square-root +

C

Characterization of the Gut and Skin Microbiome over Time in Young Children with IgE-Mediated Food Allergy/Experiment 7 +

arcsine square-root +

A

Antenatal gut microbiome profiles and effect on pregnancy outcome in HIV infected and HIV uninfected women in a resource limited setting/Experiment 1 +

arcsine square-root +

Antenatal gut microbiome profiles and effect on pregnancy outcome in HIV infected and HIV uninfected women in a resource limited setting/Experiment 3 +

arcsine square-root +

F

Faecal microbiota of schoolchildren is associated with nutritional status and markers of inflammation: a double-blinded cluster-randomized controlled trial using multi-micronutrient fortified rice/Experiment 5 +

arcsine square-root +

A

Altered gut microbiota in patients with idiopathic Parkinson's disease: an age-sex matched case-control study/Experiment 2 +

arcsine square-root +

Altered gut microbiota in patients with idiopathic Parkinson's disease: an age-sex matched case-control study/Experiment 3 +

arcsine square-root +

Altered gut microbiota in patients with idiopathic Parkinson's disease: an age-sex matched case-control study/Experiment 4 +

arcsine square-root +

Altered gut microbiota in patients with idiopathic Parkinson's disease: an age-sex matched case-control study/Experiment 7 +

arcsine square-root +

F

Fecal Microbiota Transplantation (FMT) From a Human at Low Risk for Alzheimer's Disease Improves Short-Term Recognition Memory and Increases Neuroinflammation in a 3xTg AD Mouse Model/Experiment 1 +

arcsine square-root +

Fecal Microbiota Transplantation (FMT) From a Human at Low Risk for Alzheimer's Disease Improves Short-Term Recognition Memory and Increases Neuroinflammation in a 3xTg AD Mouse Model/Experiment 4 +

arcsine square-root +

H

Human Oral Buccal Microbiomes Are Associated with Farmworker Status and Azinphos-Methyl Agricultural Pesticide Exposure/Experiment 1 +

centered log-ratio +

I

Influence of cigarette smoking on the human duodenal mucosa-associated microbiota/Experiment 1 +

centered log-ratio +

B

Breastfeeding patterns are associated with human milk microbiome composition: The Mother-Infant Microbiomes, Behavior, and Ecology Study (MIMBES)/Experiment 1 +

centered log-ratio +

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{
    "type": "PROPERTY_CONSTRAINT_SCHEMA",
    "constraints": {
        "type_constraint": "_txt",
        "allowed_values": [
            "raw counts",
            "relative abundances",
            "centered log-ratio",
            "arcsine square-root",
            "log transformation"
        ]
    }
}