Property:Data transformation

This is a property of type Text. Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any). (en)

Allowed values[edit source]

Edit list

raw counts
relative abundances
centered log-ratio
arcsine square-root
log transformation

Usage4015Constraint schema

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Showing 20 pages using this property.

C

Cigarette smoke promotes colorectal cancer through modulation of gut microbiota and related metabolites/Experiment 2 +

arcsine square-root +

L

Longitudinal disease-associated gut microbiome differences in infants with food protein-induced allergic proctocolitis/Experiment 1 +

arcsine square-root +

D

Development of the oral resistome during the first decade of life/Experiment 1 +

arcsine square-root +

Development of the oral resistome during the first decade of life/Experiment 2 +

arcsine square-root +

Development of the oral resistome during the first decade of life/Experiment 3 +

arcsine square-root +

I

Integrated Multi-Cohort Analysis of the Parkinson's Disease Gut Metagenome/Experiment 1 +

arcsine square-root +

Integrated Multi-Cohort Analysis of the Parkinson's Disease Gut Metagenome/Experiment 2 +

arcsine square-root +

T

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 8 +

arcsine square-root +

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 1 +

arcsine square-root +

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 2 +

arcsine square-root +

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 3 +

arcsine square-root +

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 5 +

arcsine square-root +

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 6 +

arcsine square-root +

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 7 +

arcsine square-root +

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 4 +

arcsine square-root +

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 9 +

arcsine square-root +

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 10 +

arcsine square-root +

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 11 +

arcsine square-root +

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 12 +

arcsine square-root +

Tumor microbiome diversity influences papillary thyroid cancer invasion/Experiment 13 +

arcsine square-root +

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{
    "type": "PROPERTY_CONSTRAINT_SCHEMA",
    "constraints": {
        "type_constraint": "_txt",
        "allowed_values": [
            "raw counts",
            "relative abundances",
            "centered log-ratio",
            "arcsine square-root",
            "log transformation"
        ]
    }
}