Property:Data transformation

This is a property of type Text. Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any). (en)

Allowed values[edit source]

Edit list

raw counts
relative abundances
centered log-ratio
arcsine square-root
log transformation

Usage5268Constraint schema

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Showing 20 pages using this property.

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10.3389/Experiment 1 +

relative abundances +

10.3390/Experiment 1 +

relative abundances +

16S gut community of the Cameron County Hispanic Cohort/Experiment 1 +

relative abundances +

16S rRNA amplicon sequencing identifies microbiota associated with oral cancer, human papilloma virus infection and surgical treatment/Experiment 1 +

relative abundances +

16S rRNA amplicon sequencing identifies microbiota associated with oral cancer, human papilloma virus infection and surgical treatment/Experiment 2 +

relative abundances +

16S rRNA amplicon sequencing identifies microbiota associated with oral cancer, human papilloma virus infection and surgical treatment/Experiment 3 +

relative abundances +

16S rRNA and metagenomic shotgun sequencing data revealed consistent patterns of gut microbiome signature in pediatric ulcerative colitis/Experiment 1 +

relative abundances +

16S rRNA gene amplicon sequencing of gut microbiota in gestational diabetes mellitus and their correlation with disease risk factors/Experiment 1 +

relative abundances +

16S rRNA gene pyrosequencing reveals shift in patient faecal microbiota during high-dose chemotherapy as conditioning regimen for bone marrow transplantation/Experiment 1 +

relative abundances +

16S rRNA gene sequencing of rectal swab in patients affected by COVID-19/Experiment 1 +

raw counts +

16S rRNA gene sequencing of rectal swab in patients affected by COVID-19/Experiment 2 +

raw counts +

16S rRNA gene sequencing of rectal swab in patients affected by COVID-19/Experiment 3 +

raw counts +

16S rRNA gene sequencing reveals altered composition of gut microbiota in individuals with kidney stones/Experiment 1 +

relative abundances +

16S rRNA gene sequencing reveals altered composition of gut microbiota in individuals with kidney stones/Experiment 2 +

relative abundances +

16S rRNA gene sequencing reveals altered gut microbiota in young adults with schizophrenia and prominent negative symptoms/Experiment 1 +

relative abundances +

16S rRNA gene sequencing reveals altered gut microbiota in young adults with schizophrenia and prominent negative symptoms/Experiment 2 +

relative abundances +

A

A Combined Analysis of Gut and Skin Microbiota in Infants with Food Allergy and Atopic Dermatitis: A Pilot Study/Experiment 1 +

relative abundances +

A Combined Analysis of Gut and Skin Microbiota in Infants with Food Allergy and Atopic Dermatitis: A Pilot Study/Experiment 2 +

relative abundances +

A Combined Analysis of Gut and Skin Microbiota in Infants with Food Allergy and Atopic Dermatitis: A Pilot Study/Experiment 3 +

relative abundances +

A Combined Analysis of Gut and Skin Microbiota in Infants with Food Allergy and Atopic Dermatitis: A Pilot Study/Experiment 4 +

relative abundances +

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{
    "type": "PROPERTY_CONSTRAINT_SCHEMA",
    "constraints": {
        "type_constraint": "_txt",
        "allowed_values": [
            "raw counts",
            "relative abundances",
            "centered log-ratio",
            "arcsine square-root",
            "log transformation"
        ]
    }
}