Changes in social environment impact primate gut microbiota composition/Experiment 6
From BugSigDB
Subjects
- Location of subjects
- Canada
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Macaca fascicularis
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Diet Dietary,Diets,Diet,diet
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Diet Effect Timepoint 2 (Decreasing)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Diet Effect Timepoint 2 (Increasing)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Diet alterations impact (Controlled diet/Timepoint 2) during the Single Living phase
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V3-V4
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- log transformation
- Statistical test
- ANCOM-BC
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- No
Signature 1
Source: Supplementary Table 6 and 7
Description: Significant taxa associated with Diet Effect in Timepoint 2
Abundance in Group 1: increased abundance in Diet Effect Timepoint 2 (Increasing)
| NCBI | Quality Control | Links |
|---|---|---|
| Desulfovibrionaceae | ||
| Helicobacteraceae | ||
| Desulfovibrio |
Revision editor(s): MyleeeA
Signature 2
Source: Supplementary Table 6 and 7
Description: Significant taxa associated with Diet Effect in Timepoint 2
Abundance in Group 1: decreased abundance in Diet Effect Timepoint 2 (Increasing)
Revision editor(s): MyleeeA
