Needs review

Curated date: 2025/01/15

Curator:

Revision editor(s):

Subjects

Location of subjects
Sweden
Host species Species from which microbiome was sampled. Contact us to have more species added.
Homo sapiens
Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
Feces

Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
Epilepsy [X]Other epilepsy,[X]Other epilepsy (disorder),EF - Epileptic fit,EP - Epilepsy,Epilectic attack, NOS,EPILEP NEC W/O INTR EPIL,EPILEP NOS W/O INTR EPIL,epilepsy,Epilepsy (disorder),Epilepsy and recurrent seizures,EPILEPSY NEC W INTR EPIL,Epilepsy NOS,Epilepsy NOS (disorder),EPILEPSY NOS W INTR EPIL,Epilepsy, NOS,Epilepsy, unspecified,Epilepsy, unspecified, with intractable epilepsy,Epilepsy, unspecified, without mention of intractable epilepsy,Epileptic,Epileptic attack,Epileptic attack, NOS,Epileptic convulsions,Epileptic convulsions, NOS,Epileptic disorder,Epileptic disorder, NOS,Epileptic fit,Epileptic fits,Epileptic fits, NOS,Epileptic Seizure,Epileptic seizure (finding),Epileptic seizures,Epileptic seizures, NOS,Generalised convulsion,Generalised fit,Generalised seizure,Generalized convulsion,Generalized fit,Generalized seizure,Generalized seizure (finding),Other forms of epilepsy,Other forms of epilepsy (disorder),Other forms of epilepsy and recurrent seizures,Other forms of epilepsy NOS,Other forms of epilepsy NOS (disorder),Other forms of epilepsy, with intractable epilepsy,Other forms of epilepsy, without mention of intractable epilepsy,Seizure disorder,seizure disorder,Seizure disorder (disorder),Epilepsy
Group 0 name Corresponds to the control (unexposed) group for case-control studies
pre-ketogenic diet nonresponders (NR_Ep1)
Group 1 name Corresponds to the case (exposed) group for case-control studies
pre-ketogenic diet responders (R_Ep1)
Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
Responders are children classified as having seizure reduction frequency greater than or equal to 50% after ketogenic diet treatment. This particular group refers to the samples taken from responders over eight years of age and pre-treatment.
Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
3 months

Lab analysis

Sequencing type
PCR
16S variable region One or more hypervariable region(s) of the bacterial 16S gene
Not specified
Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
Illumina

Statistical Analysis

Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
relative abundances
Statistical test
Welch's T-Test
Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
0.05


Signature 1

Needs review

Curated date: 2025/01/15

Curator: Kavyaayala

Revision editor(s): Kavyaayala, WikiWorks

Source: Figure 4C

Description: Fecal microbiome of R_Ep1 group compared to NR_Ep1 group

Abundance in Group 1: increased abundance in

NCBI Quality ControlLinks
Bifidobacterium breve JCM 7019
Bifidobacterium longum DJO10A
Bifidobacterium longum subsp. infantis
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088

Revision editor(s): Kavyaayala, WikiWorks