Comparative Analysis of the Gut Microbiota of Bat Species with Different Feeding Habits/Experiment 2
From BugSigDB
Subjects
- Location of subjects
- Brazil
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Sturnira lilium
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Material entity in digestive tract Digestive tract contents,Ingested material entity,Material entity in digestive tract,material entity in digestive tract
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Diet Dietary,Diets,Diet,diet
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Glossophaga soricina, Molossus molossus, Desmodus rotundus
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Sturnira lilium
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- A frugivorous bat.
- Group 0 sample size Number of subjects in the control (unexposed) group
- 23
- Group 1 sample size Number of subjects in the case (exposed) group
- 10
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V4
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- LEfSe
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.1
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
- LDA Score above Threshold for the linear discriminant analysis (LDA) score for studies using the popular LEfSe tool
- 2.0
Signature 1
Source: Figure 4
Description: LEfSe analysis of bacteria genera from four bat species with different feeding habits.
Abundance in Group 1: increased abundance in Sturnira lilium
| NCBI | Quality Control | Links |
|---|---|---|
| Campylobacter | ||
| Helicobacter | ||
| unclassified Acholeplasmataceae |
Revision editor(s): YokoC
Signature 2
Source: Figure 4
Description: LEfSe analysis of bacteria genera from four bat species with different feeding habits.
Abundance in Group 1: decreased abundance in Sturnira lilium
Revision editor(s): YokoC
