Microbial Community of Healthy Thai Vegetarians and Non-Vegetarians, Their Core Gut Microbiota, and Pathogen Risk/Experiment 1
From BugSigDB
Reviewed Marked as Reviewed by Peace Sandy on 2024-2-5
Subjects
- Location of subjects
- Thailand
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Diet Dietary,Diets,Diet,diet
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Healthy non-vegetarian
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Healthy vegetarian
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- The vegetarian volunteers consisted of ovo-lacto vegetarians, lacto-vegetarians, an ovo-vegetarian, and vegans. They had all been vegetarians for at least 3 years before participating in this study.
- Group 0 sample size Number of subjects in the control (unexposed) group
- 36
- Group 1 sample size Number of subjects in the case (exposed) group
- 36
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- 1 month
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V6-V8
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Roche454
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- Mann-Whitney (Wilcoxon)
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- No
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Chao1 Abundance-based estimator of species richness
- unchanged
Signature 1
Reviewed Marked as Reviewed by Peace Sandy on 2024-2-5
Source: Fig. 3 , Table1 and Table 3
Description: Abundance of gut microbiota at the family, genus and species levels detected in both vegetarian and non-vegetarian groups.
Abundance in Group 1: increased abundance in Healthy vegetarian
| NCBI | Quality Control | Links |
|---|---|---|
| Streptococcus | ||
| Prevotella | ||
| Klebsiella | ||
| Faecalibacterium | ||
| Roseburia | ||
| Lachnospiraceae | ||
| Blautia | ||
| Klebsiella pneumoniae | ||
| Prevotella corporis |
Revision editor(s): WikiWorks, Peace Sandy
Signature 2
Reviewed Marked as Reviewed by Peace Sandy on 2024-2-5
Source: Fig. 3 , Table3 and Table 1
Description: Abundance of gut microbiota at the family, genus and species levels detected in both vegetarian and non-vegetarian groups.
Abundance in Group 1: decreased abundance in Healthy vegetarian
| NCBI | Quality Control | Links |
|---|---|---|
| Akkermansia | ||
| Alistipes | ||
| Bacteroides | ||
| Bifidobacterium | ||
| Clostridium | ||
| Coprococcus | ||
| Dialister | ||
| Megamonas | ||
| Oscillibacter | ||
| Parabacteroides | ||
| Phascolarctobacterium | ||
| Rikenellaceae | ||
| Salmonella |
Revision editor(s): WikiWorks, Peace Sandy
