Body site-typical microbiome signatures for adults/Experiment 7

From BugSigDB


Reviewed Marked as Reviewed by Lwaldron on 2022/08/26

Curated date: 2022/01/27

Curator: Haoyanzh

Revision editor(s): Haoyanzh, Lwaldron, WikiWorks

Subjects

Location of subjects
Italy
Luxembourg
United States of America
Host species Species from which microbiome was sampled. Contact us to have more species added.
Homo sapiens
Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
Vagina Vagina,vagina,Distal oviductal region,Distal portion of oviduct,Vaginae
Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
Health study participation health questionnaire participation,health survey participation,Health study participation,health study participation
Group 1 name Corresponds to the case (exposed) group for case-control studies
healthy adult vagina 70% up
Group 1 sample size Number of subjects in the case (exposed) group
96
Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
No

Lab analysis

Sequencing type
WMS
16S variable region One or more hypervariable region(s) of the bacterial 16S gene
Not specified
Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
Illumina

Statistical Analysis

Statistical test
prevalence>70% Statistical test: "prevalence>70%" is not in the list (ANCOM, ANOSIM, ANOVA, Beta Binomial Regression, Chi-Square, Cox Proportional-Hazards Regression, Dunn's test, DESeq2, edgeR, Fisher's Exact Test, ...) of allowed values.


Signature 1

Reviewed Marked as Reviewed by Lwaldron on 2022/08/25

Curated date: 2022/01/27

Curator: Haoyanzh

Revision editor(s): Haoyanzh

Source: 10.5281/zenodo.5565690

Description: healthy adult vagina genus in >=70% samples

Abundance in Group 1:
NCBI Quality ControlLinks
Lactobacillus

Revision editor(s): Haoyanzh