Body site-typical microbiome signatures for children/Experiment 1
From BugSigDB
Reviewed Marked as Reviewed by Lwaldron on 2023-2-8
Subjects
- Location of subjects
- Italy
- United States of America
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Oral cavity Bucca,Buccal cavity,Cavity of mouth,Oral cavity,oral cavity
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Health study participation health questionnaire participation,health survey participation,Health study participation,health study participation
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- none
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- healthy child oral 50% up
- Group 1 sample size Number of subjects in the case (exposed) group
- 81
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- Not specified
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Statistical test
- prevalence>=50% Statistical test: "prevalence>=50%" is not in the list (ANCOM, ANOSIM, ANOVA, Beta Binomial Regression, Chi-Square, Cox Proportional-Hazards Regression, Dunn's test, DESeq2, edgeR, Fisher's Exact Test, ...) of allowed values.
Signature 1
Reviewed Marked as Reviewed by Lwaldron on 2022/05/25
Source: 10.5281/zenodo.5565690
Description: healthy child oral genus in >=50% study samples
Abundance in Group 1:| NCBI | Quality Control | Links |
|---|---|---|
| Streptococcus | ||
| Rothia | ||
| Veillonella | ||
| Prevotella | ||
| Gemella | ||
| Neisseria | ||
| Haemophilus |
Revision editor(s): Haoyanzh
Signature 2
Reviewed Marked as Reviewed by Lwaldron on 2022/05/25
Source: 10.5281/zenodo.5565690
Description: healthy child oral species in >= 50% samples
Abundance in Group 1:Revision editor(s): Haoyanzh
