Body site-typical microbiome signatures for children/Experiment 2
From BugSigDB
Needs review
Subjects
- Location of subjects
- Bangladesh
- China
- Estonia
- Finland
- Germany
- India
- Ireland
- Italy
- Luxembourg
- Netherlands
- Russian Federation
- Spain
- Sweden
- United Kingdom
- United Republic of Tanzania
- United States of America
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Health study participation health questionnaire participation,health survey participation,Health study participation,health study participation
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- none
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- healthy child stool 50% up
- Group 1 sample size Number of subjects in the case (exposed) group
- 3375
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- Not specified
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Statistical test
- prevalance>=50% Statistical test: "prevalance>=50%" is not in the list (ANCOM, ANOSIM, ANOVA, Beta Binomial Regression, Chi-Square, Cox Proportional-Hazards Regression, Dunn's test, DESeq2, edgeR, Fisher's Exact Test, ...) of allowed values.
Signature 1
Source: 10.5281/zenodo.5565690
Description: healthy child stool genus in >= 50% samples
Abundance in Group 1:| NCBI | Quality Control | Links |
|---|---|---|
| Streptococcus | ||
| Bifidobacterium | ||
| Escherichia | ||
| Veillonella | ||
| Bacteroides | ||
| Calvatia complutensis | ||
| Enterococcus | ||
| Clostridium | ||
| Mediterraneibacter |
Revision editor(s): Haoyanzh
Signature 2
Source: 10.5281/zenodo.5565690
Description: healthy child stool species in >= 50% samples
Abundance in Group 1:| NCBI | Quality Control | Links |
|---|---|---|
| Bifidobacterium longum | ||
| Streptococcus salivarius | ||
| Escherichia coli | ||
| Streptococcus parasanguinis |
Revision editor(s): Haoyanzh
