Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns/Experiment 1

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Curated date: 2022/03/02

Curator: Shaimaa

Revision editor(s): WikiWorks, Lwaldron, Shaimaa, Deacme, Chinelsy

Subjects

Location of subjects

Venezuela

Host species Species from which microbiome was sampled. Contact us to have more species added.

Homo sapiens

Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology

Mucosa of oral region , Vagina , Skin of forehead , Skin of forearm Mucosa of oral opening,Mucosa of oral part of face,Mucosa of organ of oral opening,Mucosa of organ of oral part of face,Mucosa of organ of oral region,Mucosa of organ of subdivision of mouth,Mucosa of subdivision of mouth,Mucous membrane of oral opening,Mucous membrane of oral part of face,Mucous membrane of oral region,Mucous membrane of subdivision of mouth,Oral opening mucosa,Oral opening mucosa of organ,Oral opening mucous membrane,Oral opening organ mucosa,Oral part of face mucosa,Oral part of face mucosa of organ,Oral part of face mucous membrane,Oral part of face organ mucosa,Oral region mucosa,Oral region mucosa of organ,Oral region mucous membrane,Oral region organ mucosa,Organ mucosa of oral opening,Organ mucosa of oral part of face,Organ mucosa of oral region,Organ mucosa of subdivision of mouth,Subdivision of mouth mucosa,Subdivision of mouth mucosa of organ,Subdivision of mouth mucous membrane,Subdivision of mouth organ mucosa,Mucosa of oral region,mucosa of oral region,Vagina,vagina,Distal oviductal region,Distal portion of oviduct,Vaginae,Forehead skin,Skin of forehead,skin of forehead,Forearm skin,Lower arm skin,Lower segment of arm skin,Skin of antebrachial region,Skin of lower arm,Skin of lower segment of arm,Skin of zeugopod of arm,Skin of forearm,skin of forearm

Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology

Cesarean section caesarean section,Cesarean section,cesarean section

Group 0 name Corresponds to the control (unexposed) group for case-control studies

vaginal delivery (Va)

Group 1 name Corresponds to the case (exposed) group for case-control studies

C-section (Cesarean section)

Group 0 sample size Number of subjects in the control (unexposed) group

4

Group 1 sample size Number of subjects in the case (exposed) group

5

Lab analysis

Sequencing type

16S

16S variable region One or more hypervariable region(s) of the bacterial 16S gene

V2

Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance

Roche454

Statistical Analysis

Statistical test

ANOSIM

Significance threshold p-value or FDR threshold used for differential abundance testing (if any)

0.001