Rare phylotypes in stone, stool, and urine microbiomes are associated with urinary stone disease/Experiment 1/Signature 1

From BugSigDB
Reviewed Marked as Reviewed by Peace Sandy on 2024-2-26

Curated date: 2023/10/21

Curator: Joju

Revision editor(s): Joju, Iram jamshed, MyleeeA

Source: Figure 6

Description: Bubble plot showing the fold change of differentially abundant common rare (B) taxa associated with health disparities (control and USD phenotypes) in stool samples. Selection of taxa is defined using DESeq2 differential abundance analysis with a false discovery rate-corrected p-value <0.05. Taxa are listed as the number of ASVs within the lowest assigned taxonomy as a means to elucidate the most important taxa associated with USD.

Abundance in Group 1: increased abundance in urinary stone disease patients

NCBI Quality ControlLinks
Actinomyces
Alistipes
Allisonella
Alloprevotella
Anaerotruncus
Bacillota
Bacteroidales
Bacteroides
Bacteroidia
Bifidobacterium
Blautia
Butyricimonas
Catenibacterium
Clostridia
Clostridiales bacterium
Colidextribacter
Collinsella
Coprobacter
Coriobacteriales
Corynebacterium
Desulfovibrio
Dialister
Erysipelotrichaceae
Fusobacterium
Hydrogenoanaerobacterium
Intestinimonas
Lachnoclostridium
Lachnospiraceae
Lachnospiraceae incertae sedis
Lactobacillus
Marvinbryantia
Megamonas
Megasphaera
Mitsuokella
Mogibacterium
Monoglobus
Muribaculaceae
Odoribacter
Oscillibacter
Parabacteroides
Parasutterella
Prevotella
Prevotellaceae
Rikenellaceae
Ruminococcus
Streptococcus
Sutterella
Treponema
Turicibacter
Veillonella
unclassified Christensenellaceae
unclassified Oscillospiraceae

Revision editor(s): Joju, Iram jamshed, MyleeeA