| Acutalibacter | | |
| Acutalibacter muris | | |
| Adlercreutzia | | |
| Adlercreutzia muris | | |
| Aeromonadales | | |
| Agathobacter rectalis | | |
| Agathobaculum | | |
| Agathobaculum desmolans | | |
| Akkermansia | | |
| Akkermansia muciniphila | | |
| Akkermansiaceae | | |
| Alistipes | | |
| Allofournierella | | |
| Allofournierella massiliensis | | |
| Alloprevotella | | |
| Alloprevotella rava | | |
| Alloprevotella tannerae | | |
| Alteracholeplasma parvum | | |
| Anaerobutyricum hallii | | |
| Anaeroplasmataceae | | |
| Anaeroplasmatales | | |
| Archaea | | |
| Asteroleplasma | | |
| Asteroleplasma anaerobium | | |
| Bacteroidaceae | | |
| Bacteroidales | | |
| Bacteroides | | |
| Bacteroides faecis | | |
| Bacteroides fragilis | | |
| Bacteroides intestinalis | | |
| Bacteroides ovatus | | |
| Bacteroidia | | |
| Bacteroidota | | |
| Bifidobacteriaceae | | |
| Bifidobacteriales | | |
| Bifidobacterium | | |
| Bifidobacterium longum | | |
| Bilophila | | |
| Bilophila wadsworthia | | |
| Blautia | | |
| Blautia caccae | | |
| Blautia hominis | | |
| Blautia luti | | |
| Breznakia | | |
| Burkholderiales | | |
| Butyrivibrio | | |
| Caproiciproducens | | |
| Caproiciproducens galactitolivorans | | |
| Catenibacterium | | |
| Catenibacterium mitsuokai | | |
| Christensenella | | |
| Christensenella massiliensis | | |
| Christensenellaceae | | |
| Clostridia | | |
| Clostridiaceae | | |
| Clostridium | | |
| Collinsella | | |
| Collinsella aerofaciens | | |
| Coprococcus | | |
| Coprococcus catus | | |
| Coprococcus comes | | |
| Coprococcus eutactus | | |
| Coriobacteriaceae | | |
| Deltaproteobacteria | | |
| Desulfovibrio | | |
| Desulfovibrionaceae | | |
| Desulfovibrionales | | |
| Dialister | | |
| Dialister succinatiphilus | | |
| Dorea | | |
| Dorea formicigenerans | | |
| Dorea longicatena | | |
| Duncaniella | | |
| Duncaniella freteri | | |
| Duodenibacillus | | |
| Eggerthellaceae | | |
| Eggerthellales | | |
| Elusimicrobiaceae | | |
| Elusimicrobiales | | |
| Elusimicrobiota | | |
| Elusimicrobium | | |
| Elusimicrobium minutum | | |
| Enterobacteriaceae | | |
| Enterocloster hominis (ex Hitch et al. 2024) | | |
| Erysipelotrichaceae | | |
| Erysipelotrichales | | |
| Erysipelotrichia | | |
| Eshraghiella crossota | | |
| Eubacteriaceae | | |
| Eubacteriales | | |
| Anaerovoracaceae | | |
| Eubacterium | | |
| Eubacterium coprostanoligenes | | |
| Eubacterium ruminantium | | |
| Faecalibacterium | | |
| Faecalibacterium prausnitzii | | |
| Faecalitalea | | |
| Faecalitalea cylindroides | | |
| Flavonifractor | | |
| Flavonifractor plautii | | |
| Fusicatenibacter | | |
| Fusicatenibacter saccharivorans | | |
| Holdemanella | | |
| Holdemanella biformis | | |
| Hoylesella oralis | | |
| Hoylesella shahii | | |
| Ihubacter | | |
| Ihubacter massiliensis | | |
| Kineothrix | | |
| Kineothrix alysoides | | |
| Lachnoclostridium | | |
| Lachnospira | | |
| Lachnospira eligens | | |
| Lachnospiraceae | | |
| Lacrimispora | | |
| Lacrimispora xylanolytica | | |
| Lactobacillaceae | | |
| Lactobacillus | | |
| Leptotrichia shahii | | |
| Leyella stercorea | | |
| Massiliprevotella | | |
| Massiliprevotella massiliensis | | |
| Mediterraneibacter | | |
| Mediterraneibacter faecis | | |
| Methanobacteria | | |
| Methanobacteriaceae | | |
| Methanobacteriales | | |
| Methanobacteriota | | |
| Methanobrevibacter | | |
| Methanobrevibacter smithii | | |
| Mitsuokella | | |
| Mollicutes | | |
| Monoglobus | | |
| Monoglobus pectinilyticus | | |
| Muribaculaceae | | |
| Mycoplasmatota | | |
| Odoribacter | | |
| Odoribacteraceae | | |
| Oscillibacter | | |
| Oscillibacter ruminantium | | |
| Oscillibacter valericigenes | | |
| Oscillospiraceae | | |
| Parabacteroides | | |
| Parabacteroides merdae | | |
| Paraprevotella | | |
| Paraprevotella clara | | |
| Peptostreptococcaceae | | |
| Phocaeicola | | |
| Phocaeicola vulgatus | | |
| Prevotella | | |
| Prevotellaceae | | |
| Prevotellamassilia | | |
| Pseudobutyrivibrio ruminis | | |
| Rickenellaceae | | |
| Romboutsia | | |
| Romboutsia timonensis | | |
| Roseburia | | |
| Roseburia inulinivorans | | |
| Ruminiclostridium | | |
| Ruminococcus | | |
| Ruminococcus bromii | | |
| Ruminococcus callidus | | |
| Ruthenibacterium | | |
| Ruthenibacterium lactatiformans | | |
| Segatella copri | | |
| Segatella oris | | |
| Sporobacter | | |
| Sporobacter termitidis | | |
| Streptococcus thermophilus | | |
| Subdoligranulum variabile | | |
| Succinivibrio | | |
| Succinivibrio dextrinosolvens | | |
| Succinivibrionaceae | | |
| Sutterella massiliensis | | |
| Sutterellaceae | | |
| Thomasclavelia | | |
| Thomasclavelia spiroformis | | |
| Veillonellaceae | | |
| Verrucomicrobiales | | |
| Verrucomicrobiia | | |
| [Eubacterium] siraeum | | |
| unclassified Oscillospiraceae | | |
| S_sp_str_D16_nov_89_414S_sp_str_D16_nov_89_414 | | |
| S_bacterium_HMT_086_nov_96_364S_bacterium_HMT_086_nov_96_364 | | |
| G_Lachnospiraceae_G_7G_Lachnospiraceae_G_7 | | |
| S_sp_HMT_040_nov_92_918S_sp_HMT_040_nov_92_918 | | |
| S_sp_str_D13_nov_91_232S_sp_str_D13_nov_91_232 | | |
| S_sp_str_NML04A032_nov_90_337S_sp_str_NML04A032_nov_90_337 | | |
| G_multigenusG_multigenus | | |
| S_multispeciesspp1_2S_multispeciesspp1_2 | | |
| S_sp_str_D16_nov_95_495S_sp_str_D16_nov_95_495 | | |
| S_multispecies_spp51_2S_multispecies_spp51_2 | | |
| S_sp_str_D16_nov_93_243S_sp_str_D16_nov_93_243 | | |
| S_bacterium_HMT_911_nov_90_652S_bacterium_HMT_911_nov_90_652 | | |
| G_Bacteroidetes_G_7_G_Bacteroidetes_G_7_ | | |
| S_bacterium_HMT_085_nov_90_766S_bacterium_HMT_085_nov_90_766 | | |
| S_bacterium_HMT_085_nov_92_809S_bacterium_HMT_085_nov_92_809 | | |
| S_bacterium_HMT_402_nov_91_011S_bacterium_HMT_402_nov_91_011 | | |
| S_bacterium_HMT_899_nov_93_290S_bacterium_HMT_899_nov_93_290 | | |
| S_bacterium_HMT_085_nov_91_422S_bacterium_HMT_085_nov_91_422 | | |
| S_multispecies_spp14_2S_multispecies_spp14_2 | | |
| S_bacterium_HMT_085_nov_93_946S_bacterium_HMT_085_nov_93_946 | | |
| S_multispecies_sppn2_2_nov_91_216S_multispecies_sppn2_2_nov_91_216 | | |
| S_bacterium_HMT_402_nov_90_337S_bacterium_HMT_402_nov_90_337 | | |
| S_bacterium_HMT_091_nov_93_213S_bacterium_HMT_091_nov_93_213 | | |
| S_multispecies_spp26_5S_multispecies_spp26_5 | | |
| S_bacterium_HMT_402 _nov_89 _038S_bacterium_HMT_402 _nov_89 _038 | | |
| S_multispecies_spp12_2S_multispecies_spp12_2 | | |
| G_ Peptostreptococcaceae_ XI_G_2G_ Peptostreptococcaceae_ XI_G_2 | | |
| S_sp_SS3_4S_sp_SS3_4 | | |
| S_multispecies_sppn27_2_nov_97_959S_multispecies_sppn27_2_nov_97_959 | | |
| S_multispecies_sppn_2_nov_95_023S_multispecies_sppn_2_nov_95_023 | | |
| C_Bacteroidetes_C_1_C_Bacteroidetes_C_1_ | | |
| O_Bacteroidetes_O_1_O_Bacteroidetes_O_1_ | | |
| F_Bacteroidetes_F_1_F_Bacteroidetes_F_1_ | | |
| S_multispecies_spp29_2S_multispecies_spp29_2 | | |
| F_Lachnospiraceae_XIVaF_Lachnospiraceae_XIVa | | |
| F_multifamilyF_multifamily | | |
| G_Clostridiales_F_1_G_2G_Clostridiales_F_1_G_2 | | |
| F_Clostridiales_F_1F_Clostridiales_F_1 | | |
| G_Ruminococcaceae_G_2G_Ruminococcaceae_G_2 | | |
| O_multiorderO_multiorder | | |
| S_sp_HMT_090_nov_92_795S_sp_HMT_090_nov_92_795 | | |
| Ruminoclostriduim methylpentosumRuminoclostriduim methylpentosum | | |
