Oral microbiome homogeneity across diverse human groups from southern Africa: first results from southwestern Angola and Zimbabwe/Experiment 31/Signature 2

From BugSigDB
Needs review

Curated date: 2024/03/29

Curator: MyleeeA

Revision editor(s): MyleeeA

Source: Supplementary Table 6 and 7

Description: Differential abundance (FDR adjusted p_value <0.05) between subsistence methods according to DESeq2 analysis. Positive values in the log2FoldChange indicate taxa enriched in the first subsistence method of the comparison, and negative values represent taxa enriched in the second one.

Abundance in Group 1: decreased abundance in Foragers

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Abiotrophia
Abiotrophia defectiva
Abiotrophia sp.
Bacillus
Bacillus sp. (in: firmicutes)
Cedecea davisae
Citrobacter
Citrobacter freundii
Citrobacter koseri
Clostridioides
Clostridioides difficile
Corynebacterium sp.
Enterobacter cancerogenus
Enterobacter hormaechei
Enterococcus
Enterococcus sp.
Escherichia
Escherichia coli
Gemella haemolysans
Gemella sanguinis
Klebsiella
Klebsiella michiganensis
Klebsiella oxytoca
Klebsiella pneumoniae
Klebsiella sp.
Lautropia
Lautropia mirabilis
Rothia
Rothia mucilaginosa
Salmonella
Salmonella sp.
[Eubacterium] brachy
Schaalia georgiae
Rothia sp. (in: high G+C Gram-positive bacteria)

Revision editor(s): MyleeeA